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Since I am @ Caltech now, I thought I'd put up some of the geeky stuff I do (beside being a crazy molecular neurobiologmotorcyclist)… like writing software.
- BioPlone and
BPMouse
- A modular
CMS built on top of Plone
to help manage the
information flow of a modern
biological research
laboratory. BPMouse in
particular is a BioPlone
module used to keep track of
transgenic mouse colonies,
breedings, animals,
etc.
- Pubmed2Emacs
- A
Pymacs
script that fetches
bibliographic information
from PubMed,
converts it into the BibTeX
format, and inserts it into
a BibTeX buffer in Emacs.
- ImageJ
and Jython
- An
brief tutorial on how to
script ImageJ,
a free image processing and
analysis application, using
the Python
language.
- pdfetch
- A small web application
server written using the Ruby
language on top of the
Camping
microframework. It
automagically fetches the
PDF reprint of a PubMed
article given its PMID.
- Ze Brein
- A Ruby
on Rails-based general
purpose CMS modeled as a
directed acyclic graph of
content nodes.
- PubMed On Steroids
- A
niece piece of social
software written in web2.0-style
that enables peer-reviewing,
annotation, discussion,
ranking, tagging (and more)
of PubMed articles using a Firefox extension.
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